getCmtNames Names of the compartments in a model

Returns the name where one is set and falls back to the id otherwise, the same rule getSpeciesNames() uses. Previously this returned the id unconditionally while getSpeciesNames() returned the name, so the two disagreed about what a "name" was. For a model whose compartments set no name – which is all ten of the bundled examples – the result is unchanged.

Usage

getCmtNames(input_model)

Arguments

input_model

input should be an SBML Model

Value

a character vector, one entry per compartment, in model order

Examples

sbml_file <- system.file("examples", "sbmlsimple.xml", package = "r2sbml")
model <- getModel(sbml_file)
#> 
#>   filename: /home/runner/work/_temp/Library/r2sbml/examples/sbmlsimple.xml
#>   error(s): 0
#> 
#> 
#> File: /home/runner/work/_temp/Library/r2sbml/examples/sbmlsimple.xml (Level 3, version 2)
getCmtNames(model)
#> [1] "comp"